Traditionally, atomistic simulation has been constrained by the computational scaling limits of ab initio methods and the parameterization overhead of empirical force fields. The recent emergence of universal machine learning interatomic potentials has significantly mitigated these bottlenecks, offering near-quantum accuracy and generalizability across diverse chemical spaces at a fraction of the computational cost. However, this shift has relocated the bottleneck to the human dimension: time-consuming mechanical processes, such as input preparation and data analysis, now dominate the research lifecycle. We introduce Paimon, a Platform for Agentic Integration in Materials Optimization and Nanoscale-simulations. Through hundreds of trials on an expert-level liquid electrolyte simulation, we show that Paimon substantially improves the reliability of agentic workflows by suppressing silent errors: plausible yet physically incorrect results. Paimon accommodates a new capability without modifying the agents already present, which we demonstrate by integrating an externally developed scientific agent. As an agent harness for atomistic simulations, Paimon affords researchers a continuous, science-centric workflow throughout the entire simulation lifecycle.